Computing various diversity index and taxonomy assessement of ASVs using Silva
This task classifies reads by taxon using a pre-fitted sklearn-based taxonomy classifier. By default, we suggest a pre-fitted Naive Bayes classifier for the database Silva (in version 13.8) with reference full-length sequences clustered at 99% sequence similarity.
Minimum required configuration: Digital lab SC2
About Silva: SILVA provides comprehensive, quality checked and regularly updated datasets of aligned small Ribosomal RNA sequences.
Depth of coverage when reaching the plateau of the curve on the previous step
Database for taxonomic affiliation
Number of threads