Computing various diversity index and taxonomy assessement of ASVs using NCBI 16S
This task classifies reads by taxon using a pre-fitted sklearn-based taxonomy classifier. By default, we suggest a pre-fitted Naive Bayes classifier for the database NCBI 16S (from 2022.07.12) with reference full-length sequences clustered at 99% sequence similarity.
Minimum required configuration: Digital lab SC2
About NCBI: NCBI 16S RNA database is a collection of 16S ribosomal RNA gene sequences from various organisms stored in the National Center for Biotechnology Information (NCBI) database.
Depth of coverage when reaching the plateau of the curve on the previous step
Database for taxonomic affiliation
Number of threads