Introduction Feature Frequency Table importer Feature Table importer Make metadata manifest Metagenome seq env task old_Q2FeatureInferenceSE Q2FeatureInferencePE Q2FeatureInferenceSE Q2GreengenesDiversity Q2NCBIDiversity Q2QualityCheck Q2RarefactionAnalysis Q2RDPDiversity Q2SilvaDiversity Qiime single-end sample frequencies Qiime1 env task Qiime2 ANCOM differential analysis Qiime2 env task Qiime2 feature frequencies (paired-end) Qiime2 manifest table exporter Qiime2 manifest table importer Qiime2 metadata table exporter Qiime2 metadata table importer Qiime2 metadata table maker Qiime2 rarefaction analysis Qiime2 taxa composition annotator Quality Table importer Rarefaction Table importer Taxonomy Table importer Taxonomy Table importer
Technical Documentation
Resources
Tasks
Qiime single-end sample frequencies
Extracts the median value of depth before rarefaction analysis (for single-end sequencing)
Qiime2SampleFrequencies class.
[Mandatory]: - Qiime2QualityCheck output file (Qiime2QualityCheckResultFolder)
Input
Output
Configuration
threads
Number of threads
int4truncated_reads_size
Read size to conserve after quality PHRED check in the previous step
int